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Showing 1 to 12 of 2016 entries
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The omega subunit of Escherichia coli K-12 RNA polymerase is not required for stringent RNA control in vivo

k-12

Xiao H, Burgess R, Cashel M.
GSID: HrvQSmIcxHAJ
D Gentry, H Xiao, R Burgess, M Cashel - Journal of bacteriology, 1991 - Am Soc Microbiol

Igarashi et al. (K. Igarashi, N. Fujita, and A. Ishihama, Nucleic Acids Res. 17:8755-8765, 1989) reported that the omega (omega) subunit of Escherichia coli RNA polymerase was required for stringent control as judged by in vitro transcription assays in...

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Gentry, D., Xiao, H., Burgess, R., & Cashel, M. (1991). The omega subunit of Escherichia coli K-12 RNA polymerase is not required for stringent RNA control in vivo. Journal of bacteriology, 173(12), 3901-3903.
Gentry, D., et al. "The omega subunit of Escherichia coli K-12 RNA polymerase is not required for stringent RNA control in vivo." Journal of bacteriology 173.12 (1991): 3901-3903.
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INSPIRE Project's Bill Taylor Memorial Scholarship Recipient Fulfilling Her STEM Dreams

Centers of Research Excellence in Science and Technology (CREST) and HBCU Research Infrastructure for Science and Engineering (RISE) AND Program Evaluation

[No authors listed]
GSID: k1_9xx1DkL0J
M Brinson - … Center 2021 Spring Intern Reports on Research …, 2019 - theinspireproject.org

Benkert, P., Künzli, M., & Schwede, T.(2009). QMEAN server for protein model quality estimation. Nucleic acids research, 37. https://doi. org/10.1093/nar/gkp322 Bienert, S., Waterhouse, A., de Beer, TAP, Tauriello, G., Studer, G., Bordoli, L., Schwede, T. The SWISS-MODEL Repository-new features...

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Brinson, M. (2019). INSPIRE Project’s Bill Taylor Memorial Scholarship Recipient Fulfilling Her STEM Dreams. INSPIRE’s NASA Goddard Space Flight Center 2021 Spring Intern Reports on Research Project.................. 27 Malaya Moon, 24, 5.
Brinson, Morgan. "INSPIRE Project’s Bill Taylor Memorial Scholarship Recipient Fulfilling Her STEM Dreams." INSPIRE’s NASA Goddard Space Flight Center 2021 Spring Intern Reports on Research Project.................. 27 Malaya Moon 24 (2019): 5.
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The PIN domain endonuclease Utp24 cleaves pre-ribosomal RNA at two coupled sites in yeast and humans.

Nucleic acids research

Wells GR, Weichmann F, Colvin D, Sloan KE, Kudla G, Tollervey D, Watkins NJ, Schneider C.
PMID: 27034467
Nucleic Acids Res. 2016 Jun 20;44(11):5399-409. doi: 10.1093/nar/gkw213. Epub 2016 Mar 31.

During ribosomal RNA (rRNA) maturation, cleavages at defined sites separate the mature rRNAs from spacer regions, but the identities of several enzymes required for 18S rRNA release remain unknown. PilT N-terminus (PIN) domain proteins are frequently endonucleases and the...

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Wells GR, Weichmann F, Colvin D, et al. The PIN domain endonuclease Utp24 cleaves pre-ribosomal RNA at two coupled sites in yeast and humans. Nucleic Acids Res. 2016;44(11):5399-409doi: 10.1093/nar/gkw213.
Wells, G. R., Weichmann, F., Colvin, D., Sloan, K. E., Kudla, G., Tollervey, D., Watkins, N. J., & Schneider, C. (2016). The PIN domain endonuclease Utp24 cleaves pre-ribosomal RNA at two coupled sites in yeast and humans. Nucleic acids research, 44(11), 5399-409. https://doi.org/10.1093/nar/gkw213
Wells, Graeme R, et al. "The PIN domain endonuclease Utp24 cleaves pre-ribosomal RNA at two coupled sites in yeast and humans." Nucleic acids research vol. 44,11 (2016): 5399-409. doi: https://doi.org/10.1093/nar/gkw213
Wells GR, Weichmann F, Colvin D, Sloan KE, Kudla G, Tollervey D, Watkins NJ, Schneider C. The PIN domain endonuclease Utp24 cleaves pre-ribosomal RNA at two coupled sites in yeast and humans. Nucleic Acids Res. 2016 Jun 20;44(11):5399-409. doi: 10.1093/nar/gkw213. Epub 2016 Mar 31. PMID: 27034467; PMCID: PMC4914098.
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DBAASP v.2: an enhanced database of structure and antimicrobial/cytotoxic activity of natural and synthetic peptides.

Nucleic acids research

Pirtskhalava M, Gabrielian A, Cruz P, Griggs HL, Squires RB, Hurt DE, Grigolava M, Chubinidze M, Gogoladze G, Vishnepolsky B, Alekseyev V, Rosenthal A, Tartakovsky M.
PMID: 27060142
Nucleic Acids Res. 2016 Jul 27;44(13):6503. doi: 10.1093/nar/gkw243. Epub 2016 Apr 08.

No abstract available.

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Pirtskhalava M, Gabrielian A, Cruz P, et al. DBAASP v.2: an enhanced database of structure and antimicrobial/cytotoxic activity of natural and synthetic peptides. Nucleic Acids Res. 2016;44(13):6503doi: 10.1093/nar/gkw243.
Pirtskhalava, M., Gabrielian, A., Cruz, P., Griggs, H. L., Squires, R. B., Hurt, D. E., Grigolava, M., Chubinidze, M., Gogoladze, G., Vishnepolsky, B., Alekseyev, V., Rosenthal, A., & Tartakovsky, M. (2016). DBAASP v.2: an enhanced database of structure and antimicrobial/cytotoxic activity of natural and synthetic peptides. Nucleic acids research, 44(13), 6503. https://doi.org/10.1093/nar/gkw243
Pirtskhalava, Malak, et al. "DBAASP v.2: an enhanced database of structure and antimicrobial/cytotoxic activity of natural and synthetic peptides." Nucleic acids research vol. 44,13 (2016): 6503. doi: https://doi.org/10.1093/nar/gkw243
Pirtskhalava M, Gabrielian A, Cruz P, Griggs HL, Squires RB, Hurt DE, Grigolava M, Chubinidze M, Gogoladze G, Vishnepolsky B, Alekseyev V, Rosenthal A, Tartakovsky M. DBAASP v.2: an enhanced database of structure and antimicrobial/cytotoxic activity of natural and synthetic peptides. Nucleic Acids Res. 2016 Jul 27;44(13):6503. doi: 10.1093/nar/gkw243. Epub 2016 Apr 08. PMID: 27060142; PMCID: PMC4994862.
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Producing irreversible topoisomerase II-mediated DNA breaks by site-specific Pt(II)-methionine coordination chemistry.

Nucleic acids research

Wang YR, Chen SF, Wu CC, Liao YW, Lin TS, Liu KT, Chen YS, Li TK, Chien TC, Chan NL.
PMID: 28977544
Nucleic Acids Res. 2017 Oct 13;45(18):10920. doi: 10.1093/nar/gkx806.

No abstract available.

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Wang YR, Chen SF, Wu CC, et al. Producing irreversible topoisomerase II-mediated DNA breaks by site-specific Pt(II)-methionine coordination chemistry. Nucleic Acids Res. 2017;45(18):10920doi: 10.1093/nar/gkx806.
Wang, Y. R., Chen, S. F., Wu, C. C., Liao, Y. W., Lin, T. S., Liu, K. T., Chen, Y. S., Li, T. K., Chien, T. C., & Chan, N. L. (2017). Producing irreversible topoisomerase II-mediated DNA breaks by site-specific Pt(II)-methionine coordination chemistry. Nucleic acids research, 45(18), 10920. https://doi.org/10.1093/nar/gkx806
Wang, Ying-Ren, et al. "Producing irreversible topoisomerase II-mediated DNA breaks by site-specific Pt(II)-methionine coordination chemistry." Nucleic acids research vol. 45,18 (2017): 10920. doi: https://doi.org/10.1093/nar/gkx806
Wang YR, Chen SF, Wu CC, Liao YW, Lin TS, Liu KT, Chen YS, Li TK, Chien TC, Chan NL. Producing irreversible topoisomerase II-mediated DNA breaks by site-specific Pt(II)-methionine coordination chemistry. Nucleic Acids Res. 2017 Oct 13;45(18):10920. doi: 10.1093/nar/gkx806. PMID: 28977544; PMCID: PMC5737763.
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Corrigendum: Autoregulatory circuit of human rpL3 expression requires hnRNP H1, NPM and KHSRP.

Nucleic acids research

Russo A, Catillo M, Esposito D, Briata P, Pietropaolo C, Russo G.
PMID: 29087476
Nucleic Acids Res. 2017 Dec 01;45(21):12600. doi: 10.1093/nar/gkx1099.

No abstract available.

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Russo A, Catillo M, Esposito D, et al. Corrigendum: Autoregulatory circuit of human rpL3 expression requires hnRNP H1, NPM and KHSRP. Nucleic Acids Res. 2017;45(21):12600doi: 10.1093/nar/gkx1099.
Russo, A., Catillo, M., Esposito, D., Briata, P., Pietropaolo, C., & Russo, G. (2017). Corrigendum: Autoregulatory circuit of human rpL3 expression requires hnRNP H1, NPM and KHSRP. Nucleic acids research, 45(21), 12600. https://doi.org/10.1093/nar/gkx1099
Russo, Annapina, et al. "Corrigendum: Autoregulatory circuit of human rpL3 expression requires hnRNP H1, NPM and KHSRP." Nucleic acids research vol. 45,21 (2017): 12600. doi: https://doi.org/10.1093/nar/gkx1099
Russo A, Catillo M, Esposito D, Briata P, Pietropaolo C, Russo G. Corrigendum: Autoregulatory circuit of human rpL3 expression requires hnRNP H1, NPM and KHSRP. Nucleic Acids Res. 2017 Dec 01;45(21):12600. doi: 10.1093/nar/gkx1099. PMID: 29087476; PMCID: PMC5716608.
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Analysis of primary microRNA loci from nascent transcriptomes reveals regulatory domains governed by chromatin architecture.

Nucleic acids research

Bouvy-Liivrand M, Hernández de Sande A, Pölönen P, Mehtonen J, Vuorenmaa T, Niskanen H, Sinkkonen L, Kaikkonen MU, Heinäniemi M.
PMID: 29036333
Nucleic Acids Res. 2017 Nov 16;45(20):12054. doi: 10.1093/nar/gkx909.

No abstract available.

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Bouvy-Liivrand M, Hernández de Sande A, Pölönen P, et al. Analysis of primary microRNA loci from nascent transcriptomes reveals regulatory domains governed by chromatin architecture. Nucleic Acids Res. 2017;45(20):12054doi: 10.1093/nar/gkx909.
Bouvy-Liivrand, M., Hernández de Sande, A., Pölönen, P., Mehtonen, J., Vuorenmaa, T., Niskanen, H., Sinkkonen, L., Kaikkonen, M. U., & Heinäniemi, M. (2017). Analysis of primary microRNA loci from nascent transcriptomes reveals regulatory domains governed by chromatin architecture. Nucleic acids research, 45(20), 12054. https://doi.org/10.1093/nar/gkx909
Bouvy-Liivrand, Maria, et al. "Analysis of primary microRNA loci from nascent transcriptomes reveals regulatory domains governed by chromatin architecture." Nucleic acids research vol. 45,20 (2017): 12054. doi: https://doi.org/10.1093/nar/gkx909
Bouvy-Liivrand M, Hernández de Sande A, Pölönen P, Mehtonen J, Vuorenmaa T, Niskanen H, Sinkkonen L, Kaikkonen MU, Heinäniemi M. Analysis of primary microRNA loci from nascent transcriptomes reveals regulatory domains governed by chromatin architecture. Nucleic Acids Res. 2017 Nov 16;45(20):12054. doi: 10.1093/nar/gkx909. PMID: 29036333; PMCID: PMC5691356.
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Measurement and modeling of intrinsic transcription terminators.

Nucleic acids research

Cambray G, Guimaraes JC, Mutalik VK, Lam C, Mai QA, Thimmaiah T, Carothers JM, Arkin AP, Endy D.
PMID: 27131373
Nucleic Acids Res. 2016 Aug 19;44(14):7006. doi: 10.1093/nar/gkw379. Epub 2016 Apr 29.

No abstract available.

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Cambray G, Guimaraes JC, Mutalik VK, et al. Measurement and modeling of intrinsic transcription terminators. Nucleic Acids Res. 2016;44(14):7006doi: 10.1093/nar/gkw379.
Cambray, G., Guimaraes, J. C., Mutalik, V. K., Lam, C., Mai, Q. A., Thimmaiah, T., Carothers, J. M., Arkin, A. P., & Endy, D. (2016). Measurement and modeling of intrinsic transcription terminators. Nucleic acids research, 44(14), 7006. https://doi.org/10.1093/nar/gkw379
Cambray, Guillaume, et al. "Measurement and modeling of intrinsic transcription terminators." Nucleic acids research vol. 44,14 (2016): 7006. doi: https://doi.org/10.1093/nar/gkw379
Cambray G, Guimaraes JC, Mutalik VK, Lam C, Mai QA, Thimmaiah T, Carothers JM, Arkin AP, Endy D. Measurement and modeling of intrinsic transcription terminators. Nucleic Acids Res. 2016 Aug 19;44(14):7006. doi: 10.1093/nar/gkw379. Epub 2016 Apr 29. PMID: 27131373; PMCID: PMC5001589.
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The Arabidopsis homologs of trithorax (ATX1) and enhancer of zeste (CLF) establish 'bivalent chromatin marks' at the silent AGAMOUS locus.

Nucleic acids research

Saleh A, Al-Abdallat A, Ndamukong I, Alvarez-Venegas R, Avramova Z.
PMID: 26673722
Nucleic Acids Res. 2016 Apr 20;44(7):3475-6. doi: 10.1093/nar/gkv1489. Epub 2015 Dec 15.

No abstract available.

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Saleh A, Al-Abdallat A, Ndamukong I, et al. The Arabidopsis homologs of trithorax (ATX1) and enhancer of zeste (CLF) establish 'bivalent chromatin marks' at the silent AGAMOUS locus. Nucleic Acids Res. 2015;44(7):3475-6doi: 10.1093/nar/gkv1489.
Saleh, A., Al-Abdallat, A., Ndamukong, I., Alvarez-Venegas, R., & Avramova, Z. (2016). The Arabidopsis homologs of trithorax (ATX1) and enhancer of zeste (CLF) establish 'bivalent chromatin marks' at the silent AGAMOUS locus. Nucleic acids research, 44(7), 3475-6. https://doi.org/10.1093/nar/gkv1489
Saleh, Abdelaty, et al. "The Arabidopsis homologs of trithorax (ATX1) and enhancer of zeste (CLF) establish 'bivalent chromatin marks' at the silent AGAMOUS locus." Nucleic acids research vol. 44,7 (2016): 3475-6. doi: https://doi.org/10.1093/nar/gkv1489
Saleh A, Al-Abdallat A, Ndamukong I, Alvarez-Venegas R, Avramova Z. The Arabidopsis homologs of trithorax (ATX1) and enhancer of zeste (CLF) establish 'bivalent chromatin marks' at the silent AGAMOUS locus. Nucleic Acids Res. 2016 Apr 20;44(7):3475-6. doi: 10.1093/nar/gkv1489. Epub 2015 Dec 15. PMID: 26673722; PMCID: PMC4838353.
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Degradation of DNA damage-independently stalled RNA polymerase II is independent of the E3 ligase Elc1.

Nucleic acids research

Karakasili E, Burkert-Kautzsch C, Kieser A, Sträßer K.
PMID: 25662212
Nucleic Acids Res. 2015 Feb 27;43(4):2486. doi: 10.1093/nar/gkv099. Epub 2015 Feb 06.

No abstract available.

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Karakasili E, Burkert-Kautzsch C, Kieser A, et al. Degradation of DNA damage-independently stalled RNA polymerase II is independent of the E3 ligase Elc1. Nucleic Acids Res. 2015;43(4):2486doi: 10.1093/nar/gkv099.
Karakasili, E., Burkert-Kautzsch, C., Kieser, A., & Sträßer, K. (2015). Degradation of DNA damage-independently stalled RNA polymerase II is independent of the E3 ligase Elc1. Nucleic acids research, 43(4), 2486. https://doi.org/10.1093/nar/gkv099
Karakasili, E, et al. "Degradation of DNA damage-independently stalled RNA polymerase II is independent of the E3 ligase Elc1." Nucleic acids research vol. 43,4 (2015): 2486. doi: https://doi.org/10.1093/nar/gkv099
Karakasili E, Burkert-Kautzsch C, Kieser A, Sträßer K. Degradation of DNA damage-independently stalled RNA polymerase II is independent of the E3 ligase Elc1. Nucleic Acids Res. 2015 Feb 27;43(4):2486. doi: 10.1093/nar/gkv099. Epub 2015 Feb 06. PMID: 25662212; PMCID: PMC4344529.
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An atlas of RNA base pairs involving modified nucleobases with optimal geometries and accurate energies.

Nucleic acids research

Chawla M, Oliva R, Bujnicki JM, Cavallo L.
PMID: 26358813
Nucleic Acids Res. 2015 Oct 30;43(19):9573. doi: 10.1093/nar/gkv925. Epub 2015 Sep 10.

No abstract available.

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Chawla M, Oliva R, Bujnicki JM, et al. An atlas of RNA base pairs involving modified nucleobases with optimal geometries and accurate energies. Nucleic Acids Res. 2015;43(19):9573doi: 10.1093/nar/gkv925.
Chawla, M., Oliva, R., Bujnicki, J. M., & Cavallo, L. (2015). An atlas of RNA base pairs involving modified nucleobases with optimal geometries and accurate energies. Nucleic acids research, 43(19), 9573. https://doi.org/10.1093/nar/gkv925
Chawla, Mohit, et al. "An atlas of RNA base pairs involving modified nucleobases with optimal geometries and accurate energies." Nucleic acids research vol. 43,19 (2015): 9573. doi: https://doi.org/10.1093/nar/gkv925
Chawla M, Oliva R, Bujnicki JM, Cavallo L. An atlas of RNA base pairs involving modified nucleobases with optimal geometries and accurate energies. Nucleic Acids Res. 2015 Oct 30;43(19):9573. doi: 10.1093/nar/gkv925. Epub 2015 Sep 10. PMID: 26358813; PMCID: PMC4627085.
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The PIN domain endonuclease Utp24 cleaves pre-ribosomal RNA at two coupled sites in yeast and humans.

Nucleic acids research

Wells GR, Weichmann F, Colvin D, Sloan KE, Kudla G, Tollervey D, Watkins NJ, Schneider C.
PMID: 27418679
Nucleic Acids Res. 2016 Oct 14;44(18):9016. doi: 10.1093/nar/gkw645. Epub 2016 Jul 14.

No abstract available.

Cite
Wells GR, Weichmann F, Colvin D, et al. The PIN domain endonuclease Utp24 cleaves pre-ribosomal RNA at two coupled sites in yeast and humans. Nucleic Acids Res. 2016;44(18):9016doi: 10.1093/nar/gkw645.
Wells, G. R., Weichmann, F., Colvin, D., Sloan, K. E., Kudla, G., Tollervey, D., Watkins, N. J., & Schneider, C. (2016). The PIN domain endonuclease Utp24 cleaves pre-ribosomal RNA at two coupled sites in yeast and humans. Nucleic acids research, 44(18), 9016. https://doi.org/10.1093/nar/gkw645
Wells, Graeme R, et al. "The PIN domain endonuclease Utp24 cleaves pre-ribosomal RNA at two coupled sites in yeast and humans." Nucleic acids research vol. 44,18 (2016): 9016. doi: https://doi.org/10.1093/nar/gkw645
Wells GR, Weichmann F, Colvin D, Sloan KE, Kudla G, Tollervey D, Watkins NJ, Schneider C. The PIN domain endonuclease Utp24 cleaves pre-ribosomal RNA at two coupled sites in yeast and humans. Nucleic Acids Res. 2016 Oct 14;44(18):9016. doi: 10.1093/nar/gkw645. Epub 2016 Jul 14. PMID: 27418679; PMCID: PMC5062985.
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Showing 1 to 12 of 2016 entries